0.1.0 - ci-build

VoiceBiomarkerforAIgenomics - Local Development build (v0.1.0). See the Directory of published versions

Extension: VRS - TTL Profile

Draft as of 2023-08-29

TTL representation of the fhir-vrs extension.

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:StructureDefinition ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "fhir-vrs"] ; # 
  fhir:text [
fhir:status [ fhir:v "extensions" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\">Placeholder</div>"
  ] ; # 
  fhir:url [ fhir:v "https://voicecollab.ai/fhir/genomics/StructureDefinition/fhir-vrs"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "0.1.0"] ; # 
  fhir:name [ fhir:v "VRS"] ; # 
  fhir:title [ fhir:v "VRS"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:date [ fhir:v "2023-08-29T12:49:28+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "Kong Lab"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "Kong Lab" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://example.org/example-publisher" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "VRS representation of a variant"] ; # 
  fhir:fhirVersion [ fhir:v "4.0.1"] ; # 
  fhir:mapping ( [
fhir:identity [ fhir:v "rim" ] ;
fhir:uri [ fhir:v "http://hl7.org/v3"^^xsd:anyURI ] ;
fhir:name [ fhir:v "RIM Mapping" ]
  ] ) ; # 
  fhir:kind [ fhir:v "complex-type"] ; # 
  fhir:abstract [ fhir:v "false"^^xsd:boolean] ; # 
  fhir:context ( [
fhir:type [ fhir:v "element" ] ;
fhir:expression [ fhir:v "Element" ]
  ] ) ; # 
  fhir:type [ fhir:v "Extension"^^xsd:anyURI] ; # 
  fhir:baseDefinition [
fhir:v "http://hl7.org/fhir/StructureDefinition/Extension"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Extension>
  ] ; # 
  fhir:derivation [ fhir:v "constraint"] ; # 
  fhir:snapshot [
    ( fhir:element [
fhir:id [ fhir:v "Extension" ] ;
fhir:path [ fhir:v "Extension" ] ;
fhir:short [ fhir:v "VRS" ] ;
fhir:definition [ fhir:v "VRS representation of a variant" ] ;
fhir:min [ fhir:v "0"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "*" ] ;
fhir:base [
fhir:path [ fhir:v "Extension" ] ;
fhir:min [ fhir:v "0"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "*" ]       ] ;
      ( fhir:condition [ fhir:v "ele-1" ] ) ;
      ( fhir:constraint [
fhir:key [ fhir:v "ele-1" ] ;
fhir:severity [ fhir:v "error" ] ;
fhir:human [ fhir:v "All FHIR elements must have a @value or children" ] ;
fhir:expression [ fhir:v "hasValue() or (children().count() > id.count())" ] ;
fhir:xpath [ fhir:v "@value|f:*|h:div" ] ;
fhir:source [
fhir:v "http://hl7.org/fhir/StructureDefinition/Element"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Element>         ]       ] [
fhir:key [ fhir:v "ext-1" ] ;
fhir:severity [ fhir:v "error" ] ;
fhir:human [ fhir:v "Must have either extensions or value[x], not both" ] ;
fhir:expression [ fhir:v "extension.exists() != value.exists()" ] ;
fhir:xpath [ fhir:v "exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])" ] ;
fhir:source [
fhir:v "http://hl7.org/fhir/StructureDefinition/Extension"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Extension>         ]       ] ) ;
fhir:isModifier [ fhir:v "false"^^xsd:boolean ]     ] [
fhir:id [ fhir:v "Extension.id" ] ;
fhir:path [ fhir:v "Extension.id" ] ;
      ( fhir:representation [ fhir:v "xmlAttr" ] ) ;
fhir:short [ fhir:v "Unique id for inter-element referencing" ] ;
fhir:definition [ fhir:v "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces." ] ;
fhir:min [ fhir:v "0"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "1" ] ;
fhir:base [
fhir:path [ fhir:v "Element.id" ] ;
fhir:min [ fhir:v "0"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "1" ]       ] ;
      ( fhir:type [
        ( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type"^^xsd:anyURI ] ;
fhir:value [ fhir:v "string"^^xsd:anyURI ]         ] ) ;
fhir:code [ fhir:v "http://hl7.org/fhirpath/System.String"^^xsd:anyURI ]       ] ) ;
fhir:isModifier [ fhir:v "false"^^xsd:boolean ] ;
fhir:isSummary [ fhir:v "false"^^xsd:boolean ] ;
      ( fhir:mapping [
fhir:identity [ fhir:v "rim" ] ;
fhir:map [ fhir:v "n/a" ]       ] )     ] [
fhir:id [ fhir:v "Extension.extension" ] ;
fhir:path [ fhir:v "Extension.extension" ] ;
fhir:slicing [
        ( fhir:discriminator [
fhir:type [ fhir:v "value" ] ;
fhir:path [ fhir:v "url" ]         ] ) ;
fhir:description [ fhir:v "Extensions are always sliced by (at least) url" ] ;
fhir:rules [ fhir:v "open" ]       ] ;
fhir:short [ fhir:v "Additional content defined by implementations" ] ;
fhir:definition [ fhir:v "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance  applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension." ] ;
fhir:comment [ fhir:v "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions.  The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone." ] ;
      ( fhir:alias [ fhir:v "extensions" ] [ fhir:v "user content" ] ) ;
fhir:min [ fhir:v "0"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "*" ] ;
fhir:base [
fhir:path [ fhir:v "Element.extension" ] ;
fhir:min [ fhir:v "0"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "*" ]       ] ;
      ( fhir:type [
fhir:code [ fhir:v "Extension"^^xsd:anyURI ]       ] ) ;
      ( fhir:constraint [
fhir:key [ fhir:v "ele-1" ] ;
fhir:severity [ fhir:v "error" ] ;
fhir:human [ fhir:v "All FHIR elements must have a @value or children" ] ;
fhir:expression [ fhir:v "hasValue() or (children().count() > id.count())" ] ;
fhir:xpath [ fhir:v "@value|f:*|h:div" ] ;
fhir:source [
fhir:v "http://hl7.org/fhir/StructureDefinition/Element"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Element>         ]       ] [
fhir:key [ fhir:v "ext-1" ] ;
fhir:severity [ fhir:v "error" ] ;
fhir:human [ fhir:v "Must have either extensions or value[x], not both" ] ;
fhir:expression [ fhir:v "extension.exists() != value.exists()" ] ;
fhir:xpath [ fhir:v "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])" ] ;
fhir:source [
fhir:v "http://hl7.org/fhir/StructureDefinition/Extension"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Extension>         ]       ] ) ;
fhir:isModifier [ fhir:v "false"^^xsd:boolean ] ;
fhir:isSummary [ fhir:v "false"^^xsd:boolean ] ;
      ( fhir:mapping [
fhir:identity [ fhir:v "rim" ] ;
fhir:map [ fhir:v "n/a" ]       ] )     ] [
fhir:id [ fhir:v "Extension.url" ] ;
fhir:path [ fhir:v "Extension.url" ] ;
      ( fhir:representation [ fhir:v "xmlAttr" ] ) ;
fhir:short [ fhir:v "identifies the meaning of the extension" ] ;
fhir:definition [ fhir:v "Source of the definition for the extension code - a logical name or a URL." ] ;
fhir:comment [ fhir:v "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension." ] ;
fhir:min [ fhir:v "1"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "1" ] ;
fhir:base [
fhir:path [ fhir:v "Extension.url" ] ;
fhir:min [ fhir:v "1"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "1" ]       ] ;
      ( fhir:type [
        ( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type"^^xsd:anyURI ] ;
fhir:value [ fhir:v "uri"^^xsd:anyURI ]         ] ) ;
fhir:code [ fhir:v "http://hl7.org/fhirpath/System.String"^^xsd:anyURI ]       ] ) ;
fhir:fixed [ fhir:v "https://voicecollab.ai/fhir/genomics/StructureDefinition/fhir-vrs"^^xsd:anyURI ] ;
fhir:isModifier [ fhir:v "false"^^xsd:boolean ] ;
fhir:isSummary [ fhir:v "false"^^xsd:boolean ] ;
      ( fhir:mapping [
fhir:identity [ fhir:v "rim" ] ;
fhir:map [ fhir:v "N/A" ]       ] )     ] [
fhir:id [ fhir:v "Extension.value[x]" ] ;
fhir:path [ fhir:v "Extension.value[x]" ] ;
fhir:short [ fhir:v "Value of extension" ] ;
fhir:definition [ fhir:v "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list)." ] ;
fhir:min [ fhir:v "0"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "1" ] ;
fhir:base [
fhir:path [ fhir:v "Extension.value[x]" ] ;
fhir:min [ fhir:v "0"^^xsd:nonNegativeInteger ] ;
fhir:max [ fhir:v "1" ]       ] ;
      ( fhir:type [
fhir:code [ fhir:v "base64Binary"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "boolean"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "canonical"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "code"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "date"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "dateTime"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "decimal"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "id"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "instant"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "integer"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "markdown"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "oid"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "positiveInt"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "string"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "time"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "unsignedInt"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "uri"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "url"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "uuid"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Address"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Age"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Annotation"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Attachment"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "CodeableConcept"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Coding"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "ContactPoint"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Count"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Distance"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Duration"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "HumanName"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Identifier"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Money"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Period"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Quantity"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Range"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Ratio"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Reference"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "SampledData"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Signature"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Timing"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "ContactDetail"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Contributor"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "DataRequirement"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Expression"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "ParameterDefinition"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "RelatedArtifact"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "TriggerDefinition"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "UsageContext"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Dosage"^^xsd:anyURI ]       ] [
fhir:code [ fhir:v "Meta"^^xsd:anyURI ]       ] ) ;
      ( fhir:constraint [
fhir:key [ fhir:v "ele-1" ] ;
fhir:severity [ fhir:v "error" ] ;
fhir:human [ fhir:v "All FHIR elements must have a @value or children" ] ;
fhir:expression [ fhir:v "hasValue() or (children().count() > id.count())" ] ;
fhir:xpath [ fhir:v "@value|f:*|h:div" ] ;
fhir:source [
fhir:v "http://hl7.org/fhir/StructureDefinition/Element"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Element>         ]       ] ) ;
fhir:isModifier [ fhir:v "false"^^xsd:boolean ] ;
fhir:isSummary [ fhir:v "false"^^xsd:boolean ] ;
      ( fhir:mapping [
fhir:identity [ fhir:v "rim" ] ;
fhir:map [ fhir:v "N/A" ]       ] )     ] )
  ] ; # 
  fhir:differential [
    ( fhir:element [
fhir:id [ fhir:v "Extension" ] ;
fhir:path [ fhir:v "Extension" ] ;
fhir:short [ fhir:v "VRS" ] ;
fhir:definition [ fhir:v "VRS representation of a variant" ]     ] [
fhir:id [ fhir:v "Extension.url" ] ;
fhir:path [ fhir:v "Extension.url" ] ;
fhir:fixed [ fhir:v "https://voicecollab.ai/fhir/genomics/StructureDefinition/fhir-vrs"^^xsd:anyURI ]     ] )
  ] . #